Upload page content

You can upload content for the page named below. If you change the page name, you can also upload content for another page. If the page name is empty, we derive the page name from the file name.

File to load page content from
Page name
Comment

How to use templates?

In ~/sparx/templates directory, there are some templates which can be modified for some frequently needed task.

randomize2d.py: This is a program to apply random alignment parameters to 2D images, then invert the transformation and store parameters in headers so transform2d.py will produce properly aligned image series.

3dg.py: This is a program that generates a stack of 2-D projections with different defocus values from a 3-D object using gridding method. This stack is then used to reconstruct the 3-D object and the FSC curve is calculated.

import_SPIDER_refi.py: This is a program that import into SPARX results of SPIDER refinement done using a setup that involves defocus groups.